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SGMS1-AS1 SGMS1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 104355295, updated on 5-Jan-2022

Summary

Official Symbol
SGMS1-AS1provided by HGNC
Official Full Name
SGMS1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:49683
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to act upstream of or within positive regulation of myelination and regulation of gene expression. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Ubiquitous expression in testis (RPKM 1.9), thyroid (RPKM 1.6) and 25 other tissues See more
Orthologs
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Genomic context

See SGMS1-AS1 in Genome Data Viewer
Location:
10q11.23
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (50624951..50631636)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (52384711..52391396)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene dynein cytoplasmic 1 intermediate chain 2 pseudogene 1 Neighboring gene sphingomyelin synthase 1 Neighboring gene RNA, U7 small nuclear 107 pseudogene Neighboring gene SHQ1, H/ACA ribonucleoprotein assembly factor pseudogene 1 Neighboring gene uncharacterized LOC105378302 Neighboring gene BEN domain containing 3 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126411.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL596137, DA202321

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    50624951..50631636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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