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PRDM1 PR/SET domain 1 [ Cuculus canorus (common cuckoo) ]

Gene ID: 104062768, updated on 12-Mar-2017

Summary

Gene symbol
PRDM1
Gene description
PR/SET domain 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Cuculus canorus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Cuculidae; Cuculus
Orthologs

Genomic context

See PRDM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM70932v1 (GCF_000709325.1) Unplaced Scaffold NW_009245766.1 (2050936..2071077, complement)

NW_009245766.1Genomic Context describing neighboring genes Neighboring gene crystallin beta-gamma domain containing 1 Neighboring gene autophagy related 5 Neighboring gene prolyl endopeptidase Neighboring gene popeye domain containing 3

Genomic regions, transcripts, and products

Genomic Sequence:
NW_009245766.1 Unplaced Scaffold Reference ASM70932v1

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
PR domain zinc finger protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Cuculus canorus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70932v1

Genomic

  1. NW_009245766.1 Reference ASM70932v1

    Range
    2050936..2071077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009564883.1XP_009563178.1  PR domain zinc finger protein 1

    Conserved Domains (5) summary
    smart00317
    Location:64170
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:648666
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:539561
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:553578
    zf-H2C2_2; Zinc-finger double domain
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