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DDX58 DExD/H-box helicase 58 [ Nipponia nippon (crested ibis) ]

Gene ID: 104011949, updated on 8-Apr-2017

Summary

Gene symbol
DDX58
Gene description
DExD/H-box helicase 58
Locus tag
Y956_07993
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs

Genomic context

See DDX58 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_009000075.1 (136702..161847)

NW_009000075.1Genomic Context describing neighboring genes Neighboring gene aconitase 1 Neighboring gene diacylglycerol kinase theta

Genomic regions, transcripts, and products

Genomic Sequence:
NW_009000075.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
probable ATP-dependent RNA helicase DDX58
Names
putative ATP-dependent RNA helicase DDX58

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_009000075.1 Reference ASM70822v1 Primary Assembly

    Range
    136702..161847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009464260.1XP_009462535.1  probable ATP-dependent RNA helicase DDX58

    Conserved Domains (6) summary
    COG1111
    Location:133660
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd15805
    Location:696809
    RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
    cd12090
    Location:361493
    MDA5_ID; Insert domain of MDA5
    pfam00270
    Location:136302
    DEAD; DEAD/DEAH box helicase
    pfam00271
    Location:506623
    Helicase_C; Helicase conserved C-terminal domain
    cl14633
    Location:476
    DD; Death Domain Superfamily of protein-protein interaction domains
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