Format

Send to:

Choose Destination

CDR2 cerebellar degeneration related protein 2 [ Homo sapiens (human) ]

Gene ID: 1039, updated on 15-Apr-2019

Summary

Official Symbol
CDR2provided by HGNC
Official Full Name
cerebellar degeneration related protein 2provided by HGNC
Primary source
HGNC:HGNC:1799
See related
Ensembl:ENSG00000140743 MIM:117340
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Yo; CDR62
Expression
Broad expression in testis (RPKM 38.3), thyroid (RPKM 28.3) and 24 other tissues See more
Orthologs

Genomic context

See CDR2 in Genome Data Viewer
Location:
16p12.2
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 16 NC_000016.10 (22345936..22374617, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (22357257..22385938, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene tRNA-Leu (anticodon AAG) 2-4 Neighboring gene RNA polymerase III subunit E Neighboring gene uncharacterized LOC440346 Neighboring gene major facilitator superfamily domain containing 13B (pseudogene)

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cerebellar degeneration-related protein 2
Names
Yo paraneoplastic antigen
cerebellar degeneration-related protein 2, 62kDa
major Yo paraneoplastic antigen
paraneoplastic cerebellar degeneration-associated antigen

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001802.2NP_001793.1  cerebellar degeneration-related protein 2

    See identical proteins and their annotated locations for NP_001793.1

    Status: VALIDATED

    Source sequence(s)
    AC092338, BC017503, BG386156, BG750955, BM714067, CB990819, M63256
    Consensus CDS
    CCDS32404.1
    UniProtKB/Swiss-Prot
    Q01850
    Related
    ENSP00000268383.2, ENST00000268383.7
    Conserved Domains (1) summary
    TIGR02168
    Location:8263
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p12 Primary Assembly

    Range
    22345936..22374617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024450143.1XP_024305911.1  cerebellar degeneration-related protein 2 isoform X1

Reference GRCh38.p12 PATCHES

Genomic

  1. NW_017852933.1 Reference GRCh38.p12 PATCHES

    Range
    730422..759098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center