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HSPD1 heat shock protein family D (Hsp60) member 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 103787195, updated on 11-Mar-2024
Gene symbol
HSPD1
Gene description
heat shock protein family D (Hsp60) member 1
See related
Ensembl:ENSCJAG00000003990
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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See HSPD1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 6 NC_071447.1 (114942606..114955679, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 6 NC_048388.1 (116137827..116151085, complement)

Chromosome 6 - NC_071447.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S15a-like Neighboring gene coenzyme Q10B Neighboring gene MOB-like protein phocein Neighboring gene small nucleolar RNA U13 Neighboring gene U6atac minor spliceosomal RNA

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Development of the first marmoset-specific DNA microarray (EUMAMA): a new genetic tool for large-scale expression profiling in a non-human primate. Datson NA, et al. BMC Genomics, 2007 Jun 25. PMID 17592630, Free PMC Article
  2. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-folding chaperone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in apoptotic mitochondrial changes IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interferon-alpha production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interleukin-6 production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of type II interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
60 kDa heat shock protein, mitochondrial
Names
mitochondrial 60 kDa heat shock protein precursor-like protein

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071447.1 Reference mCalJa1.2.pat.X

    Range
    114942606..114955679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008999144.3 → XP_008997392.1  60 kDa heat shock protein, mitochondrial

    See identical proteins and their annotated locations for XP_008997392.1

    UniProtKB/TrEMBL
    F7I3J9, U3D4H6
    Related
    ENSCJAP00000046765.1
    Conserved Domains (1) summary
    cd03344
    Location:28 → 548
    GroEL; GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found ...

  2. XM_002749593.5 → XP_002749639.1  60 kDa heat shock protein, mitochondrial

    See identical proteins and their annotated locations for XP_002749639.1

    UniProtKB/TrEMBL
    F7I3J9, U3D4H6
    Related
    ENSCJAP00000007277.1
    Conserved Domains (1) summary
    cd03344
    Location:28 → 548
    GroEL; GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found ...

  3. XM_035305220.2 → XP_035161111.1  60 kDa heat shock protein, mitochondrial

    UniProtKB/TrEMBL
    F7I3J9, U3D4H6
    Conserved Domains (1) summary
    cd03344
    Location:28 → 548
    GroEL; GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found ...

  4. XM_035305219.2 → XP_035161110.1  60 kDa heat shock protein, mitochondrial

    UniProtKB/TrEMBL
    F7I3J9, U3D4H6
    Conserved Domains (1) summary
    cd03344
    Location:28 → 548
    GroEL; GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found ...
Nucleotide Protein
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