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LOC103729158 rano class II histocompatibility antigen, A beta chain-like [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103729158, updated on 9-Nov-2023

Summary

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Gene symbol
LOC103729158
Gene description
rano class II histocompatibility antigen, A beta chain-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008328463.1 (65777..71399, complement)

NW_008328463.1Genomic Context describing neighboring genes Neighboring gene rano class II histocompatibility antigen, B-1 beta chain Neighboring gene H-2 class II histocompatibility antigen, A-F alpha chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008328463 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC class II protein complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of exogenous peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immunoglobulin production involved in immunoglobulin-mediated immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide antigen assembly with MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rano class II histocompatibility antigen, A beta chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008328463.1 Reference S.galili_v1.0 Primary Assembly

    Range
    65777..71399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008827152.3 → XP_008825374.1  rano class II histocompatibility antigen, A beta chain-like

    Conserved Domains (2) summary
    cd05766
    Location:122 → 215
    IgC_MHC_II_beta; Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain
    pfam00969
    Location:37 → 111
    MHC_II_beta; Class II histocompatibility antigen, beta domain
Nucleotide Protein
Heading Accession and Version

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