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Specc1 sperm antigen with calponin homology and coiled-coil domains 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103727434, updated on 9-Sep-2017

Summary

Gene symbol
Specc1
Gene description
sperm antigen with calponin homology and coiled-coil domains 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs

Genomic context

See Specc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008328331.1 (422551..753147, complement)

NW_008328331.1Genomic Context describing neighboring genes Neighboring gene zinc finger SWIM-type containing 7 Neighboring gene adenosine A2b receptor Neighboring gene A-kinase anchoring protein 10 Neighboring gene calcineurin B homologous protein 3 pseudogene Neighboring gene unc-51 like autophagy activating kinase 2

Genomic regions, transcripts, and products

Genomic Sequence:
NW_008328331.1 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008328331.1 Reference S.galili_v1.0 Primary Assembly

    Range
    422551..753147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008825314.2XP_008823536.1  cytospin-B isoform X1

    Conserved Domains (4) summary
    cd00014
    Location:9561056
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    pfam09311
    Location:494737
    Rab5-bind; Rabaptin-like protein
    cl02488
    Location:368515
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl09111
    Location:636731
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
  2. XM_017795757.1XP_017651246.1  cytospin-B isoform X2

  3. XM_017795771.1XP_017651260.1  cytospin-B isoform X3

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