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BBOX1-AS1 BBOX1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 103695435, updated on 25-Jan-2022

Summary

Official Symbol
BBOX1-AS1provided by HGNC
Official Full Name
BBOX1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:50700
See related
Ensembl:ENSG00000254560 AllianceGenome:HGNC:50700
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See BBOX1-AS1 in Genome Data Viewer
Location:
11p14.2-p14.1
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (27047186..27220113, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (27068733..27241660, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene 11p14.2 distal LINE-mediated recombination region Neighboring gene fin bud initiation factor homolog Neighboring gene gamma-butyrobetaine hydroxylase 1 Neighboring gene 11p14.2 proximal LINE-mediated recombination region Neighboring gene uncharacterized LOC105376600 Neighboring gene uncharacterized LOC105376601 Neighboring gene coiled-coil domain containing 34

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125766.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC015756
    Related
    ENST00000530430.1
  2. NR_125767.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at the 5' terminal exon, resulting a shorter transcript than variant 1.
    Source sequence(s)
    AC015756
    Related
    ENST00000525302.5
  3. NR_125768.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks three exons and contains alternate 5' and 3' terminal exons, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC015756, AC016450
    Related
    ENST00000526061.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    27047186..27220113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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