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LINC01322 long intergenic non-protein coding RNA 1322 [ Homo sapiens (human) ]

Gene ID: 103695433, updated on 17-Jun-2024

Summary

Official Symbol
LINC01322provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1322provided by HGNC
Primary source
HGNC:HGNC:50528
See related
Ensembl:ENSG00000244128 AllianceGenome:HGNC:50528
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RUS
Expression
Biased expression in esophagus (RPKM 1.0), brain (RPKM 0.8) and 3 other tissues See more
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Genomic context

See LINC01322 in Genome Data Viewer
Location:
3q26.1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (165206948..165539437)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (167989845..168322458)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (164924736..165257225)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374192 Neighboring gene sucrase-isomaltase Neighboring gene SLIT and NTRK like family member 3 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:165177431-165178630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:165290391-165290985 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:165431125-165431624 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:165438516-165439016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:165439017-165439517 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20770 Neighboring gene Sharpr-MPRA regulatory region 7963 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:165592326-165593525 Neighboring gene butyrylcholinesterase Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:165702256-165702834 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:165743989-165744490 Neighboring gene uncharacterized LOC124909497 Neighboring gene MT-ND4 pseudogene 17

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125764.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013458, AC073289, AC108675
  2. NR_174098.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013458, AC073289, AC108675
    Related
    ENST00000655586.1
  3. NR_174099.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013458, AC073289, AC108675
  4. NR_174100.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013458, AC073289, AC108675
  5. NR_174101.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013458, AC073289, AC108675
    Related
    ENST00000659430.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    165206948..165539437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    167989845..168322458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)