U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01435 long intergenic non-protein coding RNA 1435 [ Homo sapiens (human) ]

Gene ID: 103695365, updated on 10-Dec-2024

Summary

Official Symbol
LINC01435provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1435provided by HGNC
Primary source
HGNC:HGNC:50753
See related
Ensembl:ENSG00000229981 AllianceGenome:HGNC:50753
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_00018040
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC01435 in Genome Data Viewer
Location:
10q25.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (107871576..108069293, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (108758459..108956199, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (109631334..109829051, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:109223615-109224181 Neighboring gene RNA, 5S ribosomal pseudogene 326 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2802 Neighboring gene uncharacterized LOC101927573 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:109799357-109800556 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3995 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:109856695-109857664 Neighboring gene uncharacterized LOC105378476 Neighboring gene prostaglandin E synthase 3 pseudogene 5

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125760.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA406208, AL162273, AL355275, BX116650
    Related
    ENST00000425050.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    107871576..108069293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    108758459..108956199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)