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thumpd2 THUMP domain containing 2 [ Poecilia reticulata (guppy) ]

Gene ID: 103476457, updated on 8-Apr-2017

Summary

Gene symbol
thumpd2
Gene description
THUMP domain containing 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs

Genomic context

See thumpd2 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
12
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG15 NC_024345.1 (2814524..2828335, complement)

Linkage Group LG15 - NC_024345.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108166963 Neighboring gene Rho guanine nucleotide exchange factor 33 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 3 Neighboring gene uncharacterized LOC103476559 Neighboring gene solute carrier family 8 member A1

Genomic regions, transcripts, and products

Genomic Sequence:
NC_024345.1 Chromosome LG15 Reference Guppy_female_1.0+MT Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
THUMP domain-containing protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024345.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    2814524..2828335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017309142.1XP_017164631.1  THUMP domain-containing protein 2 isoform X2

  2. XM_008428821.1XP_008427043.1  THUMP domain-containing protein 2 isoform X1

    Conserved Domains (3) summary
    cd11715
    Location:1876
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    smart00981
    Location:231292
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:302441
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
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