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LOC103473320 TNF receptor-associated factor 2-like [ Poecilia reticulata (guppy) ]

Gene ID: 103473320, updated on 9-Nov-2023

Summary

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Gene symbol
LOC103473320
Gene description
TNF receptor-associated factor 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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Location:
chromosome: LG12
Exon count:
11
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG12 NC_024342.1 (5081207..5094018)

Linkage Group LG12 - NC_024342.1Genomic Context describing neighboring genes Neighboring gene linkage group 12 C2orf42 homolog Neighboring gene GRAM domain-containing protein 3-like Neighboring gene zinc finger protein 703-like Neighboring gene uncharacterized LOC103473321 Neighboring gene tenascin Ca Neighboring gene uncharacterized LOC103473323

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024342.1 Chromosome LG12 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024342.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    5081207..5094018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008423451.2 → XP_008421673.1  TNF receptor-associated factor 2-like

    UniProtKB/TrEMBL
    A0A3P9Q329
    Conserved Domains (4) summary
    smart00184
    Location:36 → 69
    RING; Ring finger
    pfam02176
    Location:178 → 235
    zf-TRAF; TRAF-type zinc finger
    pfam16673
    Location:362 → 424
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl02446
    Location:432 → 592
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
Nucleotide Protein
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