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rxrgb retinoid X receptor, gamma b [ Poecilia reticulata (guppy) ]

Gene ID: 103463575, updated on 11-Mar-2024

Summary

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Gene symbol
rxrgb
Gene description
retinoid X receptor, gamma b
See related
Ensembl:ENSPREG00000010895
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG4
Exon count:
13
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG4 NC_024334.1 (25057352..25088139)

Linkage Group LG4 - NC_024334.1Genomic Context describing neighboring genes Neighboring gene olfactomedin-like 2Ba Neighboring gene activating transcription factor 6 Neighboring gene LIM homeobox transcription factor 1, alpha Neighboring gene tubulin alpha-1C chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024334.1 Chromosome LG4 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR-gamma-B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024334.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    25057352..25088139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008406998.1 → XP_008405220.1  retinoic acid receptor RXR-gamma-B-like isoform X1

    UniProtKB/TrEMBL
    A0A3P9P2W6
    Conserved Domains (3) summary
    cd06943
    Location:271 → 479
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:169 → 251
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:56 → 165
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_008407001.2 → XP_008405223.1  retinoic acid receptor RXR-gamma-B-like isoform X3

    UniProtKB/TrEMBL
    A0A3P9P2W6
    Conserved Domains (3) summary
    cd06943
    Location:265 → 473
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:169 → 245
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:56 → 165
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  3. XM_008407000.1 → XP_008405222.1  retinoic acid receptor RXR-gamma-B-like isoform X2

    UniProtKB/TrEMBL
    A0A3P9P2W6
    Conserved Domains (3) summary
    cd06943
    Location:266 → 474
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:164 → 246
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:51 → 160
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  4. XM_008407002.1 → XP_008405224.1  retinoic acid receptor RXR-gamma-B-like isoform X4

    UniProtKB/TrEMBL
    A0A3P9P2W6
    Conserved Domains (3) summary
    cd06943
    Location:260 → 468
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:164 → 240
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:51 → 160
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  5. XM_008407004.2 → XP_008405226.1  retinoic acid receptor RXR-gamma-B-like isoform X6

    UniProtKB/TrEMBL
    A0A3P9P2W6
    Conserved Domains (3) summary
    cd06943
    Location:229 → 437
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:127 → 209
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:14 → 123
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  6. XM_008407003.2 → XP_008405225.1  retinoic acid receptor RXR-gamma-B-like isoform X5

    UniProtKB/TrEMBL
    A0A3P9P2W6
    Conserved Domains (3) summary
    cd06943
    Location:241 → 449
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:139 → 221
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:26 → 135
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  7. XM_008407005.2 → XP_008405227.1  retinoic acid receptor RXR-gamma-B-like isoform X7

    UniProtKB/TrEMBL
    A0A3P9P2W6
    Related
    ENSPREP00000016159.1, ENSPRET00000016329.1
    Conserved Domains (3) summary
    cd06943
    Location:222 → 430
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:120 → 202
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:7 → 116
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
Nucleotide Protein
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