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FUBP1 far upstream element binding protein 1 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103224575, updated on 21-Jul-2018

Summary

Gene symbol
FUBP1
Gene description
far upstream element binding protein 1
See related
Ensembl:ENSCSAG00000001402
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus (gb-synonym: Cercopithecus sabaeus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs

Genomic context

See FUBP1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
23
Annotation release Status Assembly Chr Location
100 current Chlorocebus_sabeus 1.1 (GCF_000409795.2) 20 NC_023661.1 (55194681..55233666)

Chromosome 20 - NC_023661.1Genomic Context describing neighboring genes Neighboring gene omega-amidase NIT2 pseudogene Neighboring gene DnaJ heat shock protein family (Hsp40) member B4 Neighboring gene nexilin F-actin binding protein Neighboring gene nuclear speckle splicing regulatory protein 1 pseudogene Neighboring gene mitoguardin 1 Neighboring gene actin, muscle-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_023661.1 chromosome 20 reference Chlorocebus_sabeus 1.1 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
far upstream element-binding protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chlorocebus_sabeus 1.1 Primary Assembly

Genomic

  1. NC_023661.1 Reference Chlorocebus_sabeus 1.1 Primary Assembly

    Range
    55194681..55233666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007978217.1XP_007976408.1  far upstream element-binding protein 1 isoform X2

    See identical proteins and their annotated locations for XP_007976408.1

    Conserved Domains (3) summary
    cd00105
    Location:299360
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:123187
    KH_1; KH domain
    pfam09005
    Location:623643
    DUF1897; Domain of unknown function (DUF1897)
  2. XM_007978216.1XP_007976407.1  far upstream element-binding protein 1 isoform X1

    Conserved Domains (2) summary
    cd00105
    Location:123185
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:623643
    DUF1897; Domain of unknown function (DUF1897)
  3. XM_007978218.1XP_007976409.1  far upstream element-binding protein 1 isoform X3

    Conserved Domains (2) summary
    cd00105
    Location:122184
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:622642
    DUF1897; Domain of unknown function (DUF1897)
  4. XM_007978220.1XP_007976411.1  far upstream element-binding protein 1 isoform X5

    See identical proteins and their annotated locations for XP_007976411.1

    Conserved Domains (2) summary
    cd00105
    Location:123185
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:623643
    DUF1897; Domain of unknown function (DUF1897)
  5. XM_007978219.1XP_007976410.1  far upstream element-binding protein 1 isoform X4

    See identical proteins and their annotated locations for XP_007976410.1

    Conserved Domains (3) summary
    cd00105
    Location:299360
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:123187
    KH_1; KH domain
    pfam09005
    Location:623643
    DUF1897; Domain of unknown function (DUF1897)
  6. XM_007978223.1XP_007976414.1  far upstream element-binding protein 1 isoform X8

    See identical proteins and their annotated locations for XP_007976414.1

    Conserved Domains (3) summary
    cd00105
    Location:277338
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:101165
    KH_1; KH domain
    pfam09005
    Location:601621
    DUF1897; Domain of unknown function (DUF1897)
  7. XM_007978221.1XP_007976412.1  far upstream element-binding protein 1 isoform X6

    See identical proteins and their annotated locations for XP_007976412.1

    Conserved Domains (3) summary
    cd00105
    Location:278339
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:102166
    KH_1; KH domain
    pfam09005
    Location:602622
    DUF1897; Domain of unknown function (DUF1897)
  8. XM_007978222.1XP_007976413.1  far upstream element-binding protein 1 isoform X7

    Conserved Domains (2) summary
    cd00105
    Location:101163
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:601621
    DUF1897; Domain of unknown function (DUF1897)
  9. XM_007978224.1XP_007976415.1  far upstream element-binding protein 1 isoform X9

    See identical proteins and their annotated locations for XP_007976415.1

    UniProtKB/TrEMBL
    A0A0D9S6X7
    Related
    ENSCSAP00000016616.1, ENSCSAT00000017131.1
    Conserved Domains (3) summary
    cd00105
    Location:278339
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:102166
    KH_1; KH domain
    pfam09005
    Location:602622
    DUF1897; Domain of unknown function (DUF1897)

RNA

  1. XR_494210.1 RNA Sequence

  2. XR_494209.1 RNA Sequence

  3. XR_494208.1 RNA Sequence

  4. XR_494211.1 RNA Sequence

  5. XR_494212.1 RNA Sequence

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