Format

Send to:

Choose Destination

SMYD5 SMYD family member 5 [ Homo sapiens (human) ]

Gene ID: 10322, updated on 21-Dec-2019

Summary

Official Symbol
SMYD5provided by HGNC
Official Full Name
SMYD family member 5provided by HGNC
Primary source
HGNC:HGNC:16258
See related
Ensembl:ENSG00000135632
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RRG1; RAI15; NN8-4AG; ZMYND23
Expression
Ubiquitous expression in ovary (RPKM 8.4), testis (RPKM 6.1) and 25 other tissues See more
Orthologs

Genomic context

See SMYD5 in Genome Data Viewer
Location:
2p13.2
Exon count:
13
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (73214245..73227221)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (73441366..73454355)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene RAB11 family interacting protein 5 Neighboring gene Sharpr-MPRA regulatory region 2018 Neighboring gene notochord homeobox Neighboring gene protease associated domain containing 1 Neighboring gene chaperonin containing TCP1 subunit 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
methylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
SET and MYND domain-containing protein 5
Names
retinoic acid induced 15
retinoic acid responsive
retinoic acid-induced protein 15

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_006062.3NP_006053.2  SET and MYND domain-containing protein 5

    See identical proteins and their annotated locations for NP_006053.2

    Status: VALIDATED

    Source sequence(s)
    BC073806, DC303248
    Consensus CDS
    CCDS33221.2
    UniProtKB/Swiss-Prot
    Q6GMV2
    Related
    ENSP00000374152.4, ENST00000389501.9
    Conserved Domains (1) summary
    smart00317
    Location:298351
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    73214245..73227221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center