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sh3tc1 SH3 domain and tetratricopeptide repeats 1 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103187170, updated on 8-Apr-2017

Summary

Gene symbol
sh3tc1
Gene description
SH3 domain and tetratricopeptide repeats 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs

Genomic context

See sh3tc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890219.1 (868467..913656)

NW_006890219.1Genomic Context describing neighboring genes Neighboring gene actin filament associated protein 1 Neighboring gene actin binding LIM protein family member 2 Neighboring gene von Willebrand factor A domain-containing protein 2-like Neighboring gene RNA binding motif protein 46

Genomic regions, transcripts, and products

Genomic Sequence:
NW_006890219 unplaced scaffold reference Callorhinchus_milii-6.1.3 Primary Assembly

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
SH3 domain and tetratricopeptide repeat-containing protein 1
Names
SH3 domain and tetratricopeptide repeats-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Callorhinchus_milii-6.1.3 Primary Assembly

Genomic

  1. NW_006890219.1 Reference Callorhinchus_milii-6.1.3 Primary Assembly

    Range
    868467..913656
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007906559.1XP_007904750.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X4

    See identical proteins and their annotated locations for XP_007904750.1

    Conserved Domains (3) summary
    sd00006
    Location:11571184
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11561226
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:301355
    SH3; Src Homology 3 domain superfamily
  2. XM_007906560.1XP_007904751.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X4

    See identical proteins and their annotated locations for XP_007904751.1

    Conserved Domains (3) summary
    sd00006
    Location:11571184
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11561226
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:301355
    SH3; Src Homology 3 domain superfamily
  3. XM_007906557.1XP_007904748.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_007904748.1

    Conserved Domains (3) summary
    sd00006
    Location:12551282
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:12541324
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:399453
    SH3; Src Homology 3 domain superfamily
  4. XM_007906556.1XP_007904747.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_007904747.1

    Conserved Domains (3) summary
    sd00006
    Location:12551282
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:12541324
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:399453
    SH3; Src Homology 3 domain superfamily
  5. XM_007906558.1XP_007904749.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X3

    Conserved Domains (3) summary
    sd00006
    Location:12301257
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:12291299
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:374428
    SH3; Src Homology 3 domain superfamily

RNA

  1. XR_488860.1 RNA Sequence

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