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eef2 eukaryotic translation elongation factor 2 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103183534, updated on 8-Apr-2017

Summary

Gene symbol
eef2
Gene description
eukaryotic translation elongation factor 2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See eef2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890138.1 (1790265..1799421)

NW_006890138.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 7A Neighboring gene protein inhibitor of activated STAT 4 Neighboring gene death associated protein kinase 3 Neighboring gene cathepsin L1-like

Genomic regions, transcripts, and products

Genomic Sequence:
NW_006890138 unplaced scaffold reference Callorhinchus_milii-6.1.3 Primary Assembly

General protein information

Preferred Names
elongation factor 2; eukaryotic translation elongation factor 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001292733.1NP_001279662.1  eukaryotic translation elongation factor 2

    See identical proteins and their annotated locations for NP_001279662.1

    Status: PROVISIONAL

    Source sequence(s)
    JX212660
    UniProtKB/TrEMBL
    K4GC83
    Conserved Domains (6) summary
    cd01885
    Location:20233
    EF2; Elongation Factor 2 (EF2) in archaea and eukarya
    cd01681
    Location:575747
    aeEF2_snRNP_like_IV; This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, ...
    cd04096
    Location:743822
    eEF2_snRNP_like_C; eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart ...
    PTZ00416
    Location:1859
    PTZ00416; elongation factor 2; Provisional
    cd03700
    Location:395489
    EF2_snRNP_like_II; Domain II of elongation factor 2 and C-terminal domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein
    cd16261
    Location:504575
    EF2_snRNP_III; Domain III of Elongation Factor 2 (EF2)

RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Callorhinchus_milii-6.1.3 Primary Assembly

Genomic

  1. NW_006890138.1 Reference Callorhinchus_milii-6.1.3 Primary Assembly

    Range
    1790265..1799421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007901085.1XP_007899276.1  elongation factor 2

    Conserved Domains (6) summary
    cd01885
    Location:20233
    EF2; Elongation Factor 2 (EF2) in archaea and eukarya
    cd01681
    Location:575747
    aeEF2_snRNP_like_IV; This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, ...
    cd04096
    Location:743822
    eEF2_snRNP_like_C; eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart ...
    PTZ00416
    Location:1859
    PTZ00416; elongation factor 2; Provisional
    cd03700
    Location:395489
    EF2_snRNP_like_II; Domain II of elongation factor 2 and C-terminal domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein
    cd16261
    Location:504575
    EF2_snRNP_III; Domain III of Elongation Factor 2 (EF2)
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