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SCN9A sodium voltage-gated channel alpha subunit 9 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103085673, updated on 8-Apr-2017

Summary

Gene symbol
SCN9A
Gene description
sodium voltage-gated channel alpha subunit 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs

Genomic context

See SCN9A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006775627.1 (356412..442220)

NW_006775627.1Genomic Context describing neighboring genes Neighboring gene primase, DNA, polypeptide 1 (49kDa) pseudogene Neighboring gene sodium voltage-gated channel alpha subunit 7 Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene tetratricopeptide repeat domain 21B

Genomic regions, transcripts, and products

Genomic Sequence:
NW_006775627 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Taste transduction, organism-specific biosystem (from KEGG)
    Taste transduction, organism-specific biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...
  • Taste transduction, conserved biosystem (from KEGG)
    Taste transduction, conserved biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...

General protein information

Preferred Names
sodium channel protein type 9 subunit alpha

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006775627.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    356412..442220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007450047.1XP_007450109.1  sodium channel protein type 9 subunit alpha

    Conserved Domains (5) summary
    cd13433
    Location:14461498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12141454
    Ion_trans; Ion transport protein
    pfam06512
    Location:9701175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:484606
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17701825
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  2. XM_007450049.1XP_007450111.1  sodium channel protein type 9 subunit alpha

    Conserved Domains (5) summary
    cd13433
    Location:14571509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12251465
    Ion_trans; Ion transport protein
    pfam06512
    Location:9811186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:484606
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17811836
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  3. XM_007450046.1XP_007450108.1  sodium channel protein type 9 subunit alpha

    Conserved Domains (5) summary
    cd13433
    Location:14571509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12251465
    Ion_trans; Ion transport protein
    pfam06512
    Location:9811186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:484606
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17811836
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  4. XM_007450048.1XP_007450110.1  sodium channel protein type 9 subunit alpha

    Conserved Domains (5) summary
    cd13433
    Location:14461498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12141454
    Ion_trans; Ion transport protein
    pfam06512
    Location:9701175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:484606
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17701825
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
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