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atoh8 atonal bHLH transcription factor 8 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103039142, updated on 11-Mar-2024

Summary

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Gene symbol
atoh8
Gene description
atonal bHLH transcription factor 8
See related
EnsemblRapid:ENSAMXG00025000166
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 10 NC_064417.1 (54015920..54028001)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 24 NC_035920.1 (13751413..13764223, complement)

Chromosome 10 - NC_064417.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 129, E3 ubiquitin protein ligase Neighboring gene uncharacterized LOC125804745 Neighboring gene uncharacterized LOC103037229 Neighboring gene heat shock protein 9 Neighboring gene RELT like 2 Neighboring gene histone deacetylase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor atoh8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064417.1 Reference AstMex3_surface

    Range
    54015920..54028001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022683621.2 → XP_022539342.1  transcription factor atoh8

    UniProtKB/TrEMBL
    A0A3B1IKN6, A0A8T2LPK9
    Related
    ENSAMXP00025000334.1, ENSAMXT00025000413.1
    Conserved Domains (1) summary
    pfam00010
    Location:173 → 224
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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