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acod1 aconitate decarboxylase 1 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103038985, updated on 11-Mar-2024

Summary

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Gene symbol
acod1
Gene description
aconitate decarboxylase 1
See related
EnsemblRapid:ENSAMXG00025032846
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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See acod1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 11 NC_064418.1 (28736024..28740304, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 19 NC_035915.1 (18346370..18350796, complement)

Chromosome 11 - NC_064418.1Genomic Context describing neighboring genes Neighboring gene Thioredoxin_like and DUF547 domain-containing protein Neighboring gene type 1 glutamine amidotransferase Neighboring gene potassium channel tetramerisation domain containing 12.1 Neighboring gene LIM domain 7a Neighboring gene LIM domain only protein 7-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064418.1 Reference AstMex3_surface

    Range
    28736024..28740304 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007251749.4 → XP_007251811.3  cis-aconitate decarboxylase

    Related
    ENSAMXP00025054271.1, ENSAMXT00025069646.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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