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foxn3 forkhead box N3 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103032353, updated on 11-Mar-2024

Summary

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Gene symbol
foxn3
Gene description
forkhead box N3
See related
EnsemblRapid:ENSAMXG00025019275
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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See foxn3 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 14 NC_064421.1 (7612275..7811050, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 9 NC_035905.1 (36071312..36379111)

Chromosome 14 - NC_064421.1Genomic Context describing neighboring genes Neighboring gene iodothyronine deiodinase 2 Neighboring gene stonin 2 Neighboring gene EF-hand calcium binding domain 11 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene tyrosyl-DNA phosphodiesterase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
forkhead box protein N3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064421.1 Reference AstMex3_surface

    Range
    7612275..7811050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007248464.4 → XP_007248526.1  forkhead box protein N3 isoform X1

    See identical proteins and their annotated locations for XP_007248526.1

    UniProtKB/TrEMBL
    A0A8B9LJ99, W5LH39
    Related
    ENSAMXP00025024843.1, ENSAMXT00025035456.1
    Conserved Domains (2) summary
    COG5025
    Location:92 → 382
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    cd20059
    Location:116 → 205
    FH_FOXN3; Forkhead (FH) domain found in Forkhead box protein N3 (FOXN3)

  2. XM_022673236.2 → XP_022528957.1  forkhead box protein N3 isoform X1

    UniProtKB/TrEMBL
    A0A8B9LJ99, W5LH39
    Conserved Domains (2) summary
    COG5025
    Location:92 → 382
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    cd20059
    Location:116 → 205
    FH_FOXN3; Forkhead (FH) domain found in Forkhead box protein N3 (FOXN3)

  3. XM_049463866.1 → XP_049319823.1  forkhead box protein N3 isoform X2

Nucleotide Protein
Heading Accession and Version

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