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afap1 actin filament associated protein 1 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103029678, updated on 13-Oct-2018

Summary

Gene symbol
afap1
Gene description
actin filament associated protein 1
See related
Ensembl:ENSAMXG00000030633
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Characidae incertae sedis; Astyanax clade; Astyanax
Orthologs

Genomic context

See afap1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
102 current Astyanax_mexicanus-2.0 (GCF_000372685.2) 6 NC_035902.1 (16628262..16757488)
101 previous assembly Astyanax_mexicanus-1.0.2 (GCF_000372685.1) Unplaced Scaffold NW_006740279.1 (24..19981, complement)

Chromosome 6 - NC_035902.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like Neighboring gene zinc finger CCHC-type containing 4 Neighboring gene actin-binding LIM protein 2-like Neighboring gene uncharacterized LOC103033380 Neighboring gene homeobox protein Mohawk-like

Genomic regions, transcripts, and products

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
actin filament-associated protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Astyanax_mexicanus-2.0

Genomic

  1. NC_035902.1 Reference Astyanax_mexicanus-2.0

    Range
    16628262..16757488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022670295.1XP_022526016.1  actin filament-associated protein 1 isoform X2

    Related
    ENSAMXP00000036113.1, ENSAMXT00000057543.1
    Conserved Domains (2) summary
    cd13306
    Location:146251
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:347446
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
  2. XM_022670294.1XP_022526015.1  actin filament-associated protein 1 isoform X1

    Related
    ENSAMXP00000041209.1, ENSAMXT00000038782.1
    Conserved Domains (2) summary
    cd13306
    Location:150255
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:351450
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
  3. XM_022670296.1XP_022526017.1  actin filament-associated protein 1 isoform X3

    Related
    ENSAMXP00000053456.1, ENSAMXT00000055407.1
    Conserved Domains (2) summary
    cd13306
    Location:150255
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:351450
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
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