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meltf melanotransferrin [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103023478, updated on 3-Dec-2024

Summary

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Gene symbol
meltf
Gene description
melanotransferrin
See related
EnsemblRapid:ENSAMXG00025023958
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Also known as
mfi2
Orthologs
human zebrafish all
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Genomic context

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See meltf in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 5 NC_064412.1 (25372120..25389343)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 13 NC_035909.1 (489443..507934)

Chromosome 5 - NC_064412.1Genomic Context describing neighboring genes Neighboring gene G2/M phase-specific E3 ubiquitin-protein ligase-like Neighboring gene prothymosin alpha a Neighboring gene discs large MAGUK scaffold protein 1a Neighboring gene leucine rich repeat containing 40 Neighboring gene leucine rich repeat containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in iron ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
melanotransferrin
Names
antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064412.1 Reference AstMex3_surface

    Range
    25372120..25389343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007248254.4 → XP_007248316.2  melanotransferrin

    UniProtKB/TrEMBL
    A0A8B9K8E1, W5KTP2
    Related
    ENSAMXP00025038068.1, ENSAMXT00025049564.1
Nucleotide Protein
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