U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sarm1 sterile alpha and TIR motif containing 1 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103022998, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sarm1
Gene description
sterile alpha and TIR motif containing 1
See related
EnsemblRapid:ENSAMXG00025019127
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sarm1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
8
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 18 NC_064425.1 (25390690..25405642, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 1 NC_035897.1 (11281209..11293882, complement)

Chromosome 18 - NC_064425.1Genomic Context describing neighboring genes Neighboring gene forkhead box N1 Neighboring gene solute carrier family 46 member 1 Neighboring gene leucine-rich repeat-containing protein 72 Neighboring gene ankyrin repeat and MYND domain containing 2a

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ nucleosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of MyD88-independent toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to axon injury IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
NAD(+) hydrolase SARM1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064425.1 Reference AstMex3_surface

    Range
    25390690..25405642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007232334.4 → XP_007232396.1  NAD(+) hydrolase SARM1

    UniProtKB/TrEMBL
    A0A8B9K609, W5KGJ6
    Related
    ENSAMXP00025024497.1, ENSAMXT00025035109.1
    Conserved Domains (3) summary
    cd09501
    Location:404 → 472
    SAM_SARM1-like_repeat1; SAM domain ot SARM1-like proteins, repeat 1
    cd09502
    Location:473 → 542
    SAM_SARM1-like_repeat2; SAM domain of SARM1-like, repeat 2
    smart00255
    Location:553 → 690
    TIR; Toll - interleukin 1 - resistance
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.