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LOC102970631 class I histocompatibility antigen, Gogo-C*0203 alpha chain-like [ Panthera tigris (tiger) ]

Gene ID: 102970631, updated on 16-Nov-2023

Summary

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Gene symbol
LOC102970631
Gene description
class I histocompatibility antigen, Gogo-C*0203 alpha chain-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
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Genomic context

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Location:
chromosome: B2
Exon count:
9
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) B2 NC_056664.1 (29714438..29717995, complement)

Chromosome B2 - NC_056664.1Genomic Context describing neighboring genes Neighboring gene transcription factor 19 Neighboring gene POU class 5 homeobox 1 Neighboring gene class I histocompatibility antigen, Gogo-B*0101 alpha chain-like Neighboring gene uncharacterized LOC102957919 Neighboring gene class I histocompatibility antigen, Gogo-B*0101 alpha chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056664.1 Chromosome B2 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DLA class I histocompatibility antigen, A9/A9 alpha chain-like; class I histocompatibility antigen, Gogo-C*0203 alpha chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056664.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    29714438..29717995 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042985939.1 → XP_042841873.1  DLA class I histocompatibility antigen, A9/A9 alpha chain-like isoform X5

    Conserved Domains (2) summary
    smart00407
    Location:218 → 289
    IGc1; Immunoglobulin C-Type
    cd00096
    Location:219 → 223
    Ig; Ig strand B [structural motif]

  2. XM_042985937.1 → XP_042841871.1  DLA class I histocompatibility antigen, A9/A9 alpha chain-like isoform X3

    Conserved Domains (2) summary
    smart00407
    Location:221 → 289
    IGc1; Immunoglobulin C-Type
    cd00096
    Location:219 → 223
    Ig; Ig strand B [structural motif]

  3. XM_042985935.1 → XP_042841869.1  class I histocompatibility antigen, Gogo-C*0203 alpha chain-like isoform X1

    Conserved Domains (2) summary
    smart00407
    Location:218 → 289
    IGc1; Immunoglobulin C-Type
    cd00096
    Location:219 → 223
    Ig; Ig strand B [structural motif]

  4. XM_042985938.1 → XP_042841872.1  DLA class I histocompatibility antigen, A9/A9 alpha chain-like isoform X4

    Conserved Domains (2) summary
    smart00407
    Location:221 → 289
    IGc1; Immunoglobulin C-Type
    cd00096
    Location:219 → 223
    Ig; Ig strand B [structural motif]

  5. XM_042985936.1 → XP_042841870.1  class I histocompatibility antigen, Gogo-C*0203 alpha chain-like isoform X2

    Conserved Domains (2) summary
    smart00407
    Location:218 → 289
    IGc1; Immunoglobulin C-Type
    cd00096
    Location:219 → 223
    Ig; Ig strand B [structural motif]
Nucleotide Protein
Heading Accession and Version

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