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NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102931508, updated on 10-Mar-2024

Summary

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Gene symbol
NHLRC1
Gene description
NHL repeat containing E3 ubiquitin protein ligase 1
Locus tag
UY3_02395
See related
EnsemblRapid:ENSCMYG00015004062
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 2 NC_057850.1 (107106030..107113304)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 2 NC_051242.1 (107104892..107113304)

Chromosome 2 - NC_057850.1Genomic Context describing neighboring genes Neighboring gene DEK proto-oncogene Neighboring gene lysine demethylase 1B Neighboring gene thiopurine S-methyltransferase Neighboring gene kinesin family member 13A Neighboring gene uncharacterized LOC122464189 Neighboring gene uncharacterized LOC122464191 Neighboring gene sirtuin 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase NHLRC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057850.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    107106030..107113304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007054887.4 → XP_007054949.2  E3 ubiquitin-protein ligase NHLRC1

    UniProtKB/TrEMBL
    M7BT74
    Related
    ENSCMYP00015006204.1, ENSCMYT00015007525.1
    Conserved Domains (3) summary
    cd14961
    Location:126 → 398
    NHL_TRIM32_like; NHL repeat domain of the tripartite motif-containing protein 32 (TRIM32) and related proteins
    sd00039
    Location:140 → 172
    7WD40; WD40 repeat [structural motif]
    cd16516
    Location:25 → 72
    RING-HC_malin; RING finger, HC subclass, found in malin and similar proteins
Nucleotide Protein
Heading Accession and Version

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