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Spsb2 splA/ryanodine receptor domain and SOCS box containing 2 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102923874, updated on 10-Mar-2024

Summary

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Gene symbol
Spsb2
Gene description
splA/ryanodine receptor domain and SOCS box containing 2
See related
Ensembl:ENSPEMG00000002397
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Spsb2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 3 NC_056010.1 (138010833..138013344)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501604.1 (415506..418106)

Chromosome 3 - NC_056010.1Genomic Context describing neighboring genes Neighboring gene U6atac minor spliceosomal RNA Neighboring gene uncharacterized LOC121828118 Neighboring gene triosephosphate isomerase 1 Neighboring gene ubiquitin specific peptidase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SPRY domain-containing SOCS box protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056010.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    138010833..138013344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042274101.1 → XP_042130035.1  SPRY domain-containing SOCS box protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A6J0CH54
    Conserved Domains (2) summary
    cd12906
    Location:46 → 217
    SPRY_SOCS1-2-4; SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4)
    cl02533
    Location:222 → 263
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...

  2. XM_006992060.3 → XP_006992122.1  SPRY domain-containing SOCS box protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006992122.1

    UniProtKB/TrEMBL
    A0A6I9M875
    Related
    ENSPEMP00000002312.1
    Conserved Domains (2) summary
    cd12906
    Location:46 → 217
    SPRY_SOCS1-2-4; SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4)
    cl02533
    Location:223 → 264
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...

  3. XM_006992061.3 → XP_006992123.1  SPRY domain-containing SOCS box protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006992123.1

    UniProtKB/TrEMBL
    A0A6I9M875
    Conserved Domains (2) summary
    cd12906
    Location:46 → 217
    SPRY_SOCS1-2-4; SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4)
    cl02533
    Location:223 → 264
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
Nucleotide Protein
Heading Accession and Version

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