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DDX58 DExD/H-box helicase 58 [ Elephantulus edwardii (Cape elephant shrew) ]

Gene ID: 102869245, updated on 8-Apr-2017

Summary

Gene symbol
DDX58
Gene description
DExD/H-box helicase 58
Gene type
protein coding
RefSeq status
MODEL
Organism
Elephantulus edwardii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Macroscelidea; Macroscelididae; Elephantulus
Orthologs

Genomic context

See DDX58 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current EleEdw1.0 (GCF_000299155.1) Unplaced Scaffold NW_006399764.1 (458985..509500)

NW_006399764.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit B6 Neighboring gene TOP1 binding arginine/serine rich protein Neighboring gene ribosomal protein S7 pseudogene Neighboring gene aconitase 1 Neighboring gene ribosomal protein S9 pseudogene

Genomic regions, transcripts, and products

Genomic Sequence:
NW_006399764 unplaced scaffold reference EleEdw1.0

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
probable ATP-dependent RNA helicase DDX58

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Elephantulus edwardii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EleEdw1.0

Genomic

  1. NW_006399764.1 Reference EleEdw1.0

    Range
    458985..509500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006881330.1XP_006881392.1  probable ATP-dependent RNA helicase DDX58

    Conserved Domains (7) summary
    COG1111
    Location:194749
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd00046
    Location:214366
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd08817
    Location:55144
    CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
    cd15805
    Location:761874
    RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
    cd12090
    Location:425560
    MDA5_ID; Insert domain of MDA5
    pfam00271
    Location:573689
    Helicase_C; Helicase conserved C-terminal domain
    cl14633
    Location:247
    DD; Death Domain Superfamily of protein-protein interaction domains
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