U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TPTEP2-CSNK1E TPTEP2-CSNK1E readthrough [ Homo sapiens (human) ]

Gene ID: 102800317, updated on 13-May-2022

Summary

Official Symbol
TPTEP2-CSNK1Eprovided by HGNC
Official Full Name
TPTEP2-CSNK1E readthroughprovided by HGNC
Primary source
HGNC:HGNC:53829
See related
Ensembl:ENSG00000283900 AllianceGenome:HGNC:53829
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LOC400927-CSNK1E
Summary
This locus represents naturally occurring readthrough transcription between the neighboring LOC400927 (transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene) and CSNK1E (casein kinase I isoform epsilon) genes on chromosome 22. The readthrough transcript encodes the same protein as the downstream gene product (casein kinase I isoform epsilon). [provided by RefSeq, Feb 2014]
Expression
Ubiquitous expression in endometrium (RPKM 31.3), brain (RPKM 31.3) and 25 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See TPTEP2-CSNK1E in Genome Data Viewer
Location:
22q13.1
Exon count:
15
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (38290691..38398915, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (38754994..38863179, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (38686697..38794920, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene transmembrane protein 184B Neighboring gene small nucleolar RNA, H/ACA box 92 Neighboring gene RNA, 7SL, cytoplasmic 704, pseudogene Neighboring gene casein kinase 1 epsilon Neighboring gene TPTE pseudogene 2 Neighboring gene CRISPRi-validated cis-regulatory element chr22.1870 Neighboring gene uncharacterized LOC105373030

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
casein kinase I isoform epsilon
Names
CKI-epsilon
LOC400927-CSNK1E readthrough
NP_001276841.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289912.2NP_001276841.1  casein kinase I isoform epsilon

    See identical proteins and their annotated locations for NP_001276841.1

    Status: VALIDATED

    Source sequence(s)
    AK092269, AL020993, Z97056
    UniProtKB/Swiss-Prot
    P49674
    UniProtKB/TrEMBL
    B3KRV2, Q5U045
    Related
    ENSP00000383067.2, ENST00000400206.7
    Conserved Domains (1) summary
    cd14125
    Location:8282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    38290691..38398915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    38754994..38863179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)