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SCN9A sodium voltage-gated channel alpha subunit 9 [ Myotis davidii ]

Gene ID: 102770400, updated on 12-Mar-2017

Summary

Gene symbol
SCN9A
Gene description
sodium voltage-gated channel alpha subunit 9
Locus tag
MDA_GLEAN10024228
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis davidii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis
Orthologs

Genomic context

See SCN9A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
101 current ASM32734v1 (GCF_000327345.1) Unplaced Scaffold NW_006293001.1 (6264389..6341708, complement)

NW_006293001.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107183523 Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene sodium voltage-gated channel alpha subunit 7 Neighboring gene KATNB1-like protein 1

Genomic regions, transcripts, and products

Genomic Sequence:
NW_006293001.1 Unplaced Scaffold Reference ASM32734v1

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Taste transduction, organism-specific biosystem (from KEGG)
    Taste transduction, organism-specific biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...
  • Taste transduction, conserved biosystem (from KEGG)
    Taste transduction, conserved biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...

General protein information

Preferred Names
sodium channel protein type 9 subunit alpha
Names
Sodium channel protein type 9 subunit alpha
sodium channel, voltage-gated, type IX, alpha subunit

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Myotis davidii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32734v1

Genomic

  1. NW_006293001.1 Reference ASM32734v1

    Range
    6264389..6341708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006766515.2XP_006766578.1  sodium channel protein type 9 subunit alpha isoform X2

    Conserved Domains (7) summary
    cd13433
    Location:14651517
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12331473
    Ion_trans; Ion transport protein
    pfam05672
    Location:427477
    MAP7; MAP7 (E-MAP-115) family
    pfam06512
    Location:9931194
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:507627
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17891841
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    cl21478
    Location:401460
    ATP-synt_B; ATP synthase B/B' CF(0)
  2. XM_006766516.2XP_006766579.1  sodium channel protein type 9 subunit alpha isoform X3

    Conserved Domains (7) summary
    cd13433
    Location:14521504
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12201460
    Ion_trans; Ion transport protein
    pfam05672
    Location:403453
    MAP7; MAP7 (E-MAP-115) family
    pfam06512
    Location:9801181
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:483603
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17761828
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    cl21478
    Location:377436
    ATP-synt_B; ATP synthase B/B' CF(0)
  3. XM_006766514.2XP_006766577.1  sodium channel protein type 9 subunit alpha isoform X1

    Conserved Domains (7) summary
    cd13433
    Location:14651517
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12331473
    Ion_trans; Ion transport protein
    pfam05672
    Location:427477
    MAP7; MAP7 (E-MAP-115) family
    pfam06512
    Location:9931194
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:507627
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17891841
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    cl21478
    Location:401460
    ATP-synt_B; ATP synthase B/B' CF(0)
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