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LINC01595 long intergenic non-protein coding RNA 1595 [ Homo sapiens (human) ]

Gene ID: 102725176, updated on 24-Apr-2022

Summary

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Official Symbol
LINC01595provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1595provided by HGNC
Primary source
HGNC:HGNC:51586
See related
AllianceGenome:HGNC:51586
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Implicated in prostate cancer. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in duodenum (RPKM 3.2), adrenal (RPKM 2.6) and 2 other tissues See more
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Genomic context

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See LINC01595 in Genome Data Viewer
Location:
19q13.33
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (47863290..47869361, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (50694155..50700293, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene cone-rod homeobox Neighboring gene tetrapeptide repeat homeobox 2 Neighboring gene sulfotransferase family 2A member 1 Neighboring gene Sharpr-MPRA regulatory region 10552

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver. Xu XR, et al. Proc Natl Acad Sci U S A, 2001 Dec 18. PMID 11752456, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    47863290..47869361 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_936005.3 RNA Sequence

  2. XR_936006.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    50694155..50700293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089182.1 RNA Sequence

  2. XR_007089183.1 RNA Sequence

Nucleotide Protein
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