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LINC02040 long intergenic non-protein coding RNA 2040 [ Homo sapiens (human) ]

Gene ID: 102724763, updated on 10-Dec-2024

Summary

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Official Symbol
LINC02040provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2040provided by HGNC
Primary source
HGNC:HGNC:52880
See related
Ensembl:ENSG00000243149 AllianceGenome:HGNC:52880
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02040 in Genome Data Viewer
Location:
3p14.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (65174939..65193503)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (65218554..65237105)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (65160614..65179178)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986017 Neighboring gene uncharacterized LOC105377125 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_70913 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:65131942-65132701 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:65139405-65140178 Neighboring gene uncharacterized LOC105377127 Neighboring gene uncharacterized LOC107986094 Neighboring gene uncharacterized LOC124906246 Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183715.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104331
    Related
    ENST00000657584.1

  2. NR_183716.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104331
    Related
    ENST00000667847.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    65174939..65193503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    65218554..65237105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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