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LINC01857 long intergenic non-protein coding RNA 1857 [ Homo sapiens (human) ]

Gene ID: 102724714, updated on 4-Sep-2022

Summary

Official Symbol
LINC01857provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1857provided by HGNC
Primary source
HGNC:HGNC:52673
See related
Ensembl:ENSG00000224137 AllianceGenome:HGNC:52673
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 6.9), spleen (RPKM 6.0) and 2 other tissues See more
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Genomic context

See LINC01857 in Genome Data Viewer
Location:
2q33.3
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (207662384..207679122)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (208136456..208153623)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (208527108..208543846)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 1 Neighboring gene methyltransferase 21A, HSPA lysine Neighboring gene ribosomal protein S29 pseudogene 9 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 2 Neighboring gene RNA, U6 small nuclear 664, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135566.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079767, AC096772
    Related
    ENST00000691648.1
  2. NR_135567.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA769410, AA971248, AC079767, AW969319

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    207662384..207679122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    208136456..208153623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)