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LINC01414 long intergenic non-protein coding RNA 1414 [ Homo sapiens (human) ]

Gene ID: 102724623, updated on 17-Jun-2024

Summary

Official Symbol
LINC01414provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1414provided by HGNC
Primary source
HGNC:HGNC:50707
See related
Ensembl:ENSG00000253554 AllianceGenome:HGNC:50707
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01414 in Genome Data Viewer
Location:
8q12.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (63856943..64368558, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (64282203..64793982, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (64769500..65281115, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902063 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:64599134-64600333 Neighboring gene uncharacterized LOC105375876 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19242 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:64715092-64715687 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:64715688-64716282 Neighboring gene long intergenic non-protein coding RNA 1289 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:64800414-64801158 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:65037341-65037533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:65166509-65167019 Neighboring gene Sharpr-MPRA regulatory region 1423 Neighboring gene uncharacterized LOC105375877 Neighboring gene NANOG hESC enhancer GRCh37_chr8:65281318-65281819 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:65282636-65283161 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:65283162-65283688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:65283689-65284213 Neighboring gene NANOG hESC enhancer GRCh37_chr8:65285363-65285903 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:65289123-65289700 Neighboring gene cytochrome c oxidase subunit 6C pseudogene 8 Neighboring gene MIR124-2 host gene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:65322543-65323742 Neighboring gene microRNA 124-2 Neighboring gene cytochrome c oxidase subunit NDUFA4-like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125826.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DA389335
    Related
    ENST00000521958.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    63856943..64368558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    64282203..64793982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)