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CARMAL coronary artery disease region linked MFGE8 regulatory lncRNA [ Homo sapiens (human) ]

Gene ID: 102724566, updated on 23-Nov-2021

Summary

Official Symbol
CARMALprovided by HGNC
Official Full Name
coronary artery disease region linked MFGE8 regulatory lncRNAprovided by HGNC
Primary source
HGNC:HGNC:55102
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See CARMAL in Genome Data Viewer
Location:
15q26.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (89041028..89082880)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chr15.3129 Neighboring gene capping actin protein of muscle Z-line subunit alpha 2 pseudogene Neighboring gene abhydrolase domain containing 2, acylglycerol lipase Neighboring gene RNA, U7 small nuclear 195 pseudogene Neighboring gene high mobility group box 1 pseudogene 8

Genomic regions, transcripts, and products

Genomic Sequence:
NC_000015.10 Chromosome 15 Reference GRCh38.p13 Primary Assembly

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.
EBI GWAS Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    89041028..89082880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_932596.2 RNA Sequence

  2. XR_932594.3 RNA Sequence

  3. XR_001751650.2 RNA Sequence

  4. XR_001751649.2 RNA Sequence

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