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LINC02015 long intergenic non-protein coding RNA 2015 [ Homo sapiens (human) ]

Gene ID: 102724550, updated on 10-Oct-2023

Summary

Official Symbol
LINC02015provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2015provided by HGNC
Primary source
HGNC:HGNC:52850
See related
Ensembl:ENSG00000231574 AllianceGenome:HGNC:52850
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KCCAT211
Expression
Biased expression in liver (RPKM 2.1), kidney (RPKM 0.3) and 2 other tissues See more
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Genomic context

See LINC02015 in Genome Data Viewer
Location:
3q26.32
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (177816865..177899224)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (180619739..180702109)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (177534653..177617012)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 578 Neighboring gene small nucleolar RNA SNORA18 Neighboring gene Sharpr-MPRA regulatory region 5391 Neighboring gene NANOG hESC enhancer GRCh37_chr3:177383662-177384200 Neighboring gene fibroblast growth factor receptor 3 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:177543728-177544228 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:177544229-177544729 Neighboring gene uncharacterized LOC107986154 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:177712027-177712234 Neighboring gene RNA, U6 small nuclear 1120, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.
EBI GWAS Catalog

General gene information

Other Names

  • renal clear cell carcinoma-associated transcript 211

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110826.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012031, AK056252
    Related
    ENST00000436078.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    177816865..177899224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    180619739..180702109
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)