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SVIL-AS1 SVIL antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102724316, updated on 13-May-2022

Summary

Official Symbol
SVIL-AS1provided by HGNC
Official Full Name
SVIL antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51219
See related
Ensembl:ENSG00000224597 AllianceGenome:HGNC:51219
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in heart (RPKM 7.5), esophagus (RPKM 7.4) and 25 other tissues See more
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Genomic context

See SVIL-AS1 in Genome Data Viewer
Location:
10p11.23
Exon count:
8
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (29409534..29487856)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (29441210..29518924)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (29698463..29776785)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984217 Neighboring gene uncharacterized LOC105376473 Neighboring gene uncharacterized LOC105376474 Neighboring gene patched domain containing 3 pseudogene 1 Neighboring gene supervillin Neighboring gene uncharacterized LOC124902401 Neighboring gene microRNA 604

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003930.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) uses an alternate splice site in the 5' terminal exon, lacks an internal exon and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AA564262, BC031656, DA024320
    Related
    ENST00000427063.7
  2. NR_110920.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL158167, BC063483, BM925434, DA024320
  3. NR_110921.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate internal exon, compared to variant 1.
    Source sequence(s)
    AL158167, BC063483, DA024320, DA952579
    Related
    ENST00000414457.6
  4. NR_110922.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site in the 5' terminal exon and lacks an alternate internal exon, compared to variant 1.
    Source sequence(s)
    AL158167, BC063483, DA024320
    Related
    ENST00000423223.6
  5. NR_110923.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site in the 5' terminal exon, lacks an internal exon and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AA564262, BC107795, DA024320, DA745252
  6. NR_110924.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks an internal exon and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AA564262, BC107795, DA024320
    Related
    ENST00000623175.4
  7. NR_110925.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) lacks an internal exon and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AL158167, BF739922, DA024320, DA715011
    Related
    ENST00000445521.6
  8. NR_110926.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) uses an alternate splice site in the 5' terminal exon, lacks an internal exon and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AL158167, BF739922, BX461223, DA024320
    Related
    ENST00000686207.1
  9. NR_110927.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) uses an alternate splice site in the 5' terminal exon, lacks an internal exon and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AL158167, BC066966, DA024320
    Related
    ENST00000646086.2
  10. NR_110928.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10) contains alternate 5' and 3' terminal exons, and lacks an internal exon, compared to variant 1.
    Source sequence(s)
    BF511092, BF739922
    Related
    ENST00000455774.1
  11. NR_110929.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (11) uses an alternate splice site in the 5' terminal exon, lacks an internal exon and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    BF739922, DA024320

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    29409534..29487856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    29441210..29518924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)