U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC102724159 periodic tryptophan protein 2 homolog [ Homo sapiens (human) ]

Gene ID: 102724159, updated on 4-Feb-2024

Summary

Gene symbol
LOC102724159
Gene description
periodic tryptophan protein 2 homolog
See related
Ensembl:ENSG00000275464
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Annotation information
Note: GeneID:102724159 is on a scaffold that is thought to be a false duplication and thus this gene is likely redundant with GeneID:5822. [11 Jun 2021]
Expression
Ubiquitous expression in lymph node (RPKM 7.7), spleen (RPKM 7.3) and 25 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LOC102724159 in Genome Data Viewer
Location:
21p12
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (5130871..5154658, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928576 Neighboring gene glutamine amidotransferase class 1 domain containing 3B Neighboring gene trafficking protein particle complex subunit 10-like Neighboring gene long intergenic non-protein coding RNA 1670

Genomic regions, transcripts, and products

Genomic Sequence:
NC_000021.9 Chromosome 21 Reference GRCh38.p14 Primary Assembly

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Clone Names

  • MGC4635, FLJ94907, MGC23222

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding HDA PubMed 
Component Evidence Code Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleoplasm TAS
Traceable Author Statement
more info
 
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of small-subunit processome IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
periodic tryptophan protein 2 homolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368238.1NP_001355167.1  periodic tryptophan protein 2 homolog

    Status: VALIDATED

    Source sequence(s)
    FP565260
    Related
    ENST00000617716.4

RNA

  1. NR_160695.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FP565260

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    5130871..5154658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)