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LINC01418 long intergenic non-protein coding RNA 1418 [ Homo sapiens (human) ]

Gene ID: 102724001, updated on 10-Oct-2023

Summary

Official Symbol
LINC01418provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1418provided by HGNC
Primary source
HGNC:HGNC:50711
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01418 in Genome Data Viewer
Location:
15q25.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (81859747..81967194, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (79723213..79831229, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370921 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:81966619-81967178 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:81989805-81990445 Neighboring gene uncharacterized LOC124903541 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82031361-82031872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:82042098-82042672 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82050490-82051006 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82051007-82051522 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9957 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9958 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:82162852-82163453 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:82163454-82164054 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9959 Neighboring gene CRISPRi-validated cis-regulatory element chr15.2841 Neighboring gene MPRA-validated peak2399 silencer Neighboring gene uncharacterized LOC105370922 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:82287863-82288521 Neighboring gene protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudogene Neighboring gene uncharacterized LOC105370923

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    81859747..81967194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001751640.2 RNA Sequence

  2. XR_001751639.2 RNA Sequence

  3. XR_932527.3 RNA Sequence

  4. XR_001751642.2 RNA Sequence

  5. XR_001751641.2 RNA Sequence

  6. XR_932528.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    79723213..79831229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085765.1 RNA Sequence

  2. XR_007085766.1 RNA Sequence

  3. XR_007085764.1 RNA Sequence

  4. XR_007085769.1 RNA Sequence

  5. XR_007085768.1 RNA Sequence

  6. XR_007085767.1 RNA Sequence