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LYPLAL1-AS1 LYPLAL1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102723886, updated on 10-Oct-2023

Summary

Official Symbol
LYPLAL1-AS1provided by HGNC
Official Full Name
LYPLAL1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:54054
See related
AllianceGenome:HGNC:54054
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 2.1), endometrium (RPKM 0.4) and 2 other tissues See more
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Genomic context

See LYPLAL1-AS1 in Genome Data Viewer
Location:
1q41
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (219435158..219557324, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (218671437..218793577, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (219608500..219730666, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene lysophospholipase like 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2546 Neighboring gene ribosomal modification protein rimK like family member B pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 2527 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:219572714-219573343 Neighboring gene uncharacterized LOC107984018 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1821 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:219615440-219616639 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2547 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:219674825-219676024 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:219728356-219729055 Neighboring gene uncharacterized LOC124904514 Neighboring gene uncharacterized LOC124904657 Neighboring gene zinc finger CCCH-type containing 11B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135822.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL513283, AW292250, BE466517, BX952597

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    219435158..219557324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    218671437..218793577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)