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LINC01315 long intergenic non-protein coding RNA 1315 [ Homo sapiens (human) ]

Gene ID: 102723775, updated on 9-Jan-2022

Summary

Official Symbol
LINC01315provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1315provided by HGNC
Primary source
HGNC:HGNC:50513
See related
Ensembl:ENSG00000229891
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C22orf32-1; lnc-C22orf32-1
Expression
Broad expression in thyroid (RPKM 6.7), skin (RPKM 2.3) and 15 other tissues See more
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Genomic context

See LINC01315 in Genome Data Viewer
Location:
22q13.2
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (42364400..42369208, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (42760406..42765214, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene ccytochrome P450 family 2 subfamily D member 8, pseudogene Neighboring gene transcription factor 20 Neighboring gene opioid growth factor receptor pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 6115 Neighboring gene NFAT activating protein with ITAM motif 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120595.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AI914073, BC038245, CB050274
    Related
    ENST00000669665.2
  2. NR_120596.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3' exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AI914073, AV709904, BC038245, CB050274
    Related
    ENST00000432473.2
  3. NR_120597.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses alternate splice sites at the 5' and 3' exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AI914073, CB050274
    Related
    ENST00000412060.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    42364400..42369208 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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