U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SLC38A2-AS1 SLC38A2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102723757, updated on 4-Mar-2025
Official Symbol
SLC38A2-AS1provided by HGNC
Official Full Name
SLC38A2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55454
See related
Ensembl:ENSG00000258096 AllianceGenome:HGNC:55454
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in urinary bladder (RPKM 16.5), placenta (RPKM 16.5) and 22 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table
See SLC38A2-AS1 in Genome Data Viewer
Location:
12q13.11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (46372783..46373778)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (46332342..46333337)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (46766566..46767561)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:46662284-46663266 Neighboring gene uncharacterized LOC105378248 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4383 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:46674619-46675430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6245 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:46765735-46766438 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4385 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6248 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:46776823-46777330 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4387 Neighboring gene solute carrier family 38 member 2 Neighboring gene NANOG hESC enhancer GRCh37_chr12:46780024-46780525 Neighboring gene SLC38A4 antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr12:46789058-46789559 Neighboring gene uncharacterized LOC124902923 Neighboring gene NANOG hESC enhancer GRCh37_chr12:46824129-46824630 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4388 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6249 Neighboring gene Sharpr-MPRA regulatory region 10724 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6250 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6251 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6252 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6253 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:46979048-46979802 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:46979803-46980557 Neighboring gene olfactory receptor family 7 subfamily A member 19 pseudogene

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

GeneRIFs: Gene References Into Functions

Review eQTL and phenotype association data in this region using PheGenI

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187299.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025031
    Related
    ENST00000793295.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    46372783..46373778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    46332342..46333337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials