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LINC01500 long intergenic non-protein coding RNA 1500 [ Homo sapiens (human) ]

Gene ID: 102723742, updated on 25-Jan-2022

Summary

Official Symbol
LINC01500provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1500provided by HGNC
Primary source
HGNC:HGNC:51166
See related
Ensembl:ENSG00000258583 AllianceGenome:HGNC:51166
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.6) See more
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Genomic context

See LINC01500 in Genome Data Viewer
Location:
14q23.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (58828288..59017328)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (59295006..59484046)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 9975 Neighboring gene ribosomal protein L31 pseudogene 4 Neighboring gene transmembrane protein 98 pseudogene Neighboring gene uncharacterized LOC107984692 Neighboring gene aldo-keto reductase family 1 member B1 pseudogene 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study of panic disorder in the Japanese population.
EBI GWAS Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110547.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AW102585, CR739775
    Related
    ENST00000555378.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    58828288..59017328
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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