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CT45A10 cancer/testis antigen family 45 member A10 [ Homo sapiens (human) ]

Gene ID: 102723631, updated on 12-Oct-2019

Summary

Official Symbol
CT45A10provided by HGNC
Official Full Name
cancer/testis antigen family 45 member A10provided by HGNC
Primary source
HGNC:HGNC:51263
See related
Ensembl:ENSG00000269586
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT45-5; CT45A5
Expression
Restricted expression toward testis (RPKM 7.2) See more
Orthologs

Genomic context

See CT45A10 in Genome Data Viewer
Location:
Xq26.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (135880752..135893428, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene cancer/testis antigen family 45 member A8 Neighboring gene cancer/testis antigen family 45 member A9 Neighboring gene Sharpr-MPRA regulatory region 13624 Neighboring gene sarcoma antigen 1 Neighboring gene cancer/testis antigen family 45 member A11, pseudogene

Genomic regions, transcripts, and products

Genomic Sequence:
NC_000023.11 Chromosome X Reference GRCh38.p13 Primary Assembly

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Clone Names

  • FLJ78398, MGC88118, MGC177967, MGC177968, MGC178071, MGC178072

Gene Ontology Provided by GOA

Process Evidence Code Pubs
snRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integrator complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
cancer/testis antigen family 45 member A10
Names
Cancer/testis antigen 45-5
Cancer/testis antigen 45A10
Cancer/testis antigen 45A5
Cancer/testis antigen family 45 member A5
cancer/testis antigen family 45 member A-like

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001291527.1NP_001278456.1  cancer/testis antigen family 45 member A10

    See identical proteins and their annotated locations for NP_001278456.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1,2, 3, and 4 encode the same protein.
    Source sequence(s)
    AC240441, BC144527
    Consensus CDS
    CCDS76035.1
    UniProtKB/Swiss-Prot
    P0DMU8, P0DMU9
    Conserved Domains (1) summary
    pfam15300
    Location:121183
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus
  2. NM_001291528.1NP_001278457.1  cancer/testis antigen family 45 member A10

    See identical proteins and their annotated locations for NP_001278457.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 3, and 4 encode the same protein.
    Source sequence(s)
    AC240441, AK292207, BC144528
    Consensus CDS
    CCDS76035.1
    UniProtKB/Swiss-Prot
    P0DMU8, P0DMU9
    Related
    ENSP00000484601.1, ENST00000611668.4
    Conserved Domains (1) summary
    pfam15300
    Location:121183
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus
  3. NM_001291529.1NP_001278458.1  cancer/testis antigen family 45 member A10

    See identical proteins and their annotated locations for NP_001278458.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 3, and 4 encode the same protein.
    Source sequence(s)
    AC240441, AK292207, BC070138
    Consensus CDS
    CCDS76035.1
    UniProtKB/Swiss-Prot
    P0DMU8, P0DMU9
    Related
    ENSP00000481558.1, ENST00000617981.1
    Conserved Domains (1) summary
    pfam15300
    Location:121183
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus
  4. NM_001291530.1NP_001278459.1  cancer/testis antigen family 45 member A10

    See identical proteins and their annotated locations for NP_001278459.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 3, and 4 encode the same protein.
    Source sequence(s)
    AC240441, AK292207, BC070138
    Consensus CDS
    CCDS76035.1
    UniProtKB/Swiss-Prot
    P0DMU8, P0DMU9
    Conserved Domains (1) summary
    pfam15300
    Location:121183
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    135880752..135893428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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