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LINC01445 long intergenic non-protein coding RNA 1445 [ Homo sapiens (human) ]

Gene ID: 102723605, updated on 12-Oct-2019

Summary

Official Symbol
LINC01445provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1445provided by HGNC
Primary source
HGNC:HGNC:50771
See related
Ensembl:ENSG00000231427
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more

Genomic context

See LINC01445 in Genome Data Viewer
Location:
7p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (54330697..54349845)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene HAUS augmin like complex subunit 6 pseudogene 3 Neighboring gene long intergenic non-protein coding RNA 2854 Neighboring gene solute carrier family 25 member 5 pseudogene 3 Neighboring gene VSTM2A overlapping transcript 1 Neighboring gene V-set and transmembrane domain containing 2A

Genomic regions, transcripts, and products

Genomic Sequence:
NC_000007.14 Chromosome 7 Reference GRCh38.p13 Primary Assembly

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120515.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC073269, AC096658
    Related
    ENST00000426205.2
  2. NR_120516.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC073269, AC096658
    Related
    ENST00000458615.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    54330697..54349845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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