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LOC102714202 glucan endo-1,3-beta-glucosidase 4-like [ Oryza brachyantha (malo sina) ]

Gene ID: 102714202, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102714202
Gene description
glucan endo-1,3-beta-glucosidase 4-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza brachyantha
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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See LOC102714202 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ObraRS2 (GCF_000231095.2) 7 NC_023169.2 (14782137..14791373)
101 previous assembly Oryza_brachyantha.v1.4b (GCF_000231095.1) 7 NC_023169.1 (13778416..13788068)

Chromosome 7 - NC_023169.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102705931 Neighboring gene probable homogentisate phytyltransferase 2, chloroplastic Neighboring gene glutamic acid-rich protein-like Neighboring gene chlorophyll a-b binding protein 7, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ObraRS2 Primary Assembly

Genomic

  1. NC_023169.2 Reference ObraRS2 Primary Assembly

    Range
    14782137..14791373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015839214.2 → XP_015694700.2  glucan endo-1,3-beta-glucosidase 4-like

    Conserved Domains (3) summary
    smart00768
    Location:372 → 457
    X8; Possibly involved in carbohydrate binding
    cl00154
    Location:593 → 732
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    cl23725
    Location:35 → 356
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
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