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specc1 sperm antigen with calponin homology and coiled-coil domains 1 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102692784, updated on 12-Mar-2017

Summary

Gene symbol
specc1
Gene description
sperm antigen with calponin homology and coiled-coil domains 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs

Genomic context

See specc1 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
11
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG22 NC_023200.1 (4063580..4120191, complement)

Linkage Group LG22 - NC_023200.1Genomic Context describing neighboring genes Neighboring gene zinc finger SWIM-type containing 7 Neighboring gene adenosine A2b receptor Neighboring gene translocase of inner mitochondrial membrane 22 Neighboring gene ABR, RhoGEF and GTPase activating protein Neighboring gene spermatogenesis associated 22

Genomic regions, transcripts, and products

Genomic Sequence:
NC_023200.1 Chromosome LG22 Reference LepOcu1 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023200.1 Reference LepOcu1 Primary Assembly

    Range
    4063580..4120191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015367313.1XP_015222799.1  cytospin-B

    Conserved Domains (5) summary
    cd00014
    Location:9221005
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    pfam01442
    Location:291445
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    pfam16034
    Location:310434
    JAKMIP_CC3; JAKMIP CC3 domain
    pfam17098
    Location:353614
    Wtap; Pre-mRNA-splicing regulator WTAP
    cl09111
    Location:542637
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
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