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LINC01159 long intergenic non-protein coding RNA 1159 [ Homo sapiens (human) ]

Gene ID: 102682016, updated on 25-Jan-2022

Summary

Official Symbol
LINC01159provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1159provided by HGNC
Primary source
HGNC:HGNC:49514
See related
Ensembl:ENSG00000229743 MIM:618208; AllianceGenome:HGNC:49514
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
linc-Brn1b
Summary
Predicted to act upstream of or within cerebellar cortex structural organization; homeostasis of number of cells within a tissue; and regulation of gene expression. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Restricted expression toward kidney (RPKM 2.1) See more
Orthologs
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Genomic context

See LINC01159 in Genome Data Viewer
Location:
2q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (104865497..104872595, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (105481955..105489053, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene POU3F3 adjacent non-coding transcript 1 Neighboring gene VISTA enhancer hs1553 Neighboring gene Sharpr-MPRA regulatory region 193 Neighboring gene POU class 3 homeobox 3 Neighboring gene VISTA enhancer hs990 Neighboring gene MRPS9 antisense RNA 2 Neighboring gene Sharpr-MPRA regulatory region 1600

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110373.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC018730
    Related
    ENST00000433433.1
  2. NR_110374.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC018730

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    104865497..104872595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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