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Gm16759 predicted gene, 16759 [ Mus musculus (house mouse) ]

Gene ID: 102639582, updated on 25-Jan-2022

Summary

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Official Symbol
Gm16759provided by MGI
Official Full Name
predicted gene, 16759provided by MGI
Primary source
MGI:MGI:4439683
See related
AllianceGenome:MGI:4439683
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 4.9) and cortex adult (RPKM 0.2) See more
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Genomic context

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See Gm16759 in Genome Data Viewer
Location:
9 C; 9 34.07 cM
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (63306646..63441286)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (63399317..63534004)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase 5 Neighboring gene predicted gene, 39355 Neighboring gene RIKEN cDNA 2300009A05 gene Neighboring gene IQ motif containing H Neighboring gene predicted gene, 25995 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 17 pseudogene Neighboring gene predicted gene, 39358 Neighboring gene alpha- and gamma-adaptin binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Ash1l and lnc-Smad3 coordinate Smad3 locus accessibility to modulate iTreg polarization and T cell autoimmunity. Xia M, et al. Nat Commun, 2017 Jun 9. PMID 28598443, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. An lncRNA(Gm16759), namely lnc-Smad3, which interacts with the histone deacetylase HDAC1 and silences Smad3 transcription.
    Title: Ash1l and lnc-Smad3 coordinate Smad3 locus accessibility to modulate iTreg polarization and T cell autoimmunity.
Submit: New GeneRIF Correction

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    63306646..63441286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_003948339.2 RNA Sequence

  2. XR_379542.5 RNA Sequence

  3. XR_003948340.2 RNA Sequence

  4. XR_379543.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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