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Hnf1aos1 HNF1 homeobox A, opposite strand 1 [ Mus musculus (house mouse) ]

Gene ID: 102638537, updated on 8-Feb-2024

Summary

Official Symbol
Hnf1aos1provided by MGI
Official Full Name
HNF1 homeobox A, opposite strand 1provided by MGI
Primary source
MGI:MGI:3652225
See related
AllianceGenome:MGI:3652225
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Haster; Gm13824
Summary
Is expressed in several structures, including heart; intestine; liver; lung; and metanephros. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in colon adult (RPKM 8.4), kidney adult (RPKM 6.5) and 9 other tissues See more
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Genomic context

See Hnf1aos1 in Genome Data Viewer
Location:
5 F; 5 55.99 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (115106802..115135985)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (114968743..114997926)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2210016L21 gene Neighboring gene 2'-5' oligoadenylate synthetase-like 1 Neighboring gene STARR-positive B cell enhancer ABC_E1057 Neighboring gene HNF1 homeobox A Neighboring gene STARR-seq mESC enhancer starr_14093 Neighboring gene STARR-seq mESC enhancer starr_14096 Neighboring gene signal peptide peptidase 3 Neighboring gene STARR-seq mESC enhancer starr_14098 Neighboring gene STARR-seq mESC enhancer starr_14099 Neighboring gene predicted gene, 54336 Neighboring gene ribosomal protein L37, retrotransposed

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    115106802..115135985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_387597.4 RNA Sequence

  2. XR_878697.3 RNA Sequence

  3. XR_878698.3 RNA Sequence

  4. XR_878699.3 RNA Sequence

  5. XR_878700.3 RNA Sequence